Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| radical sam additional 4fe4s-binding spasm domain-containing protein | SAMN02910353_02237 | Not Available | + | 2551381 - 2552361 | 37292.7 |
| hypothetical protein | SAMN02910353_02238 | Not Available | + | 2552358 - 2553092 | 25815.9 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02239 | Not Available | - | 2553311 - 2555017 | 65403.7 |
| indolepyruvate ferredoxin oxidoreductase alpha subunit | SAMN02910353_02240 | Not Available | + | 2555517 - 2557364 | 65937.4 |
| indolepyruvate ferredoxin oxidoreductase beta subunit | SAMN02910353_02241 | Not Available | + | 2557357 - 2557929 | 20525.3 |
| phenylacetate-coa ligase | SAMN02910353_02242 | Not Available | + | 2557951 - 2559186 | 46069.8 |
| magnesium transporter | SAMN02910353_02243 | Not Available | + | 2559413 - 2560330 | 35541.4 |
| hexapeptide repeat of succinyl-transferase | SAMN02910353_02244 | Not Available | + | 2560391 - 2560954 | 20242.4 |
| hypothetical protein | SAMN02910353_02245 | Not Available | + | 2560954 - 2561115 | 6054.41 |
| hypothetical protein | SAMN02910353_02246 | Not Available | + | 2561084 - 2561452 | 14422.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.