Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| small subunit ribosomal protein s16 | SAMN02910353_02227 | Not Available | + | 2536660 - 2536902 | 9067.12 |
| hypothetical protein | SAMN02910353_02228 | Not Available | + | 2536983 - 2537216 | 8207.1 |
| dna-binding transcriptional regulator, lysr family | SAMN02910353_02229 | Not Available | + | 2537587 - 2538525 | 35045.1 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN02910353_02230 | Not Available | + | 2538934 - 2539347 | 15801.7 |
| aspartate kinase | SAMN02910353_02231 | Not Available | + | 2539757 - 2541094 | 49159.9 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02232 | Not Available | - | 2541199 - 2543526 | 88519.0 |
| nicotinate phosphoribosyltransferase | SAMN02910353_02233 | Not Available | + | 2544158 - 2545357 | 46842.8 |
| hypothetical protein | SAMN02910353_02234 | Not Available | - | 2545490 - 2548837 | 125015.0 |
| hypothetical protein | SAMN02910353_02235 | Not Available | - | 2549352 - 2550314 | 33262.4 |
| transcriptional regulator, tetr family | SAMN02910353_02236 | Not Available | - | 2550581 - 2551153 | 22032.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.