Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| yd repeat-containing protein | SAMN02910353_02175 | Not Available | + | 2483125 - 2483370 | 9498.35 |
| short-chain dehydrogenase | SAMN02910353_02176 | Not Available | - | 2483572 - 2484324 | 26837.9 |
| peptidoglycan-n-acetylmuramic acid deacetylase | SAMN02910353_02177 | Not Available | + | 2484523 - 2485263 | 27065.9 |
| protein of unknown function | SAMN02910353_02178 | Not Available | - | 2485441 - 2486013 | 21388.9 |
| hypothetical protein | SAMN02910353_02179 | Not Available | + | 2486347 - 2488608 | 84287.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02910353_02180 | Not Available | + | 2488896 - 2489438 | 20393.3 |
| hypothetical protein | SAMN02910353_02181 | Not Available | + | 2489425 - 2489997 | 21023.0 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN02910353_02184 | Not Available | - | 2490563 - 2491072 | 19027.4 |
| two-component system, response regulator, stage 0 sporulation protein a | SAMN02910353_02185 | Not Available | - | 2491099 - 2491866 | 28217.8 |
| hypothetical protein | SAMN02910353_02186 | Not Available | - | 2492052 - 2493365 | 48656.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.