Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| vitamin b12 dependent methionine synthase, activation domain | SAMN02910353_02135 | Not Available | - | 2434563 - 2435240 | 24313.3 |
| methylenetetrahydrofolate reductase (nadph) | SAMN02910353_02136 | Not Available | - | 2435237 - 2436097 | 31476.7 |
| uracil-dna glycosylase | SAMN02910353_02137 | Not Available | - | 2436108 - 2436779 | 25619.7 |
| protein of unknown function | SAMN02910353_02138 | Not Available | - | 2436835 - 2437344 | 19503.7 |
| trna(ile)-lysidine synthase tils/mesj | SAMN02910353_02139 | Not Available | + | 2437610 - 2438350 | 26952.9 |
| lpxtg-motif cell wall anchor domain-containing protein | SAMN02910353_02140 | Not Available | - | 2438394 - 2439419 | 34906.1 |
| hypothetical protein | SAMN02910353_02141 | Not Available | - | 2439519 - 2441735 | 79833.8 |
| cohesin domain-containing protein | SAMN02910353_02142 | Not Available | - | 2442229 - 2447685 | 188848.0 |
| hypothetical protein | SAMN02910353_02143 | Not Available | - | 2447741 - 2449393 | 57238.8 |
| cohesin domain-containing protein | SAMN02910353_02144 | Not Available | - | 2449507 - 2450388 | 29821.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.