Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| stage v sporulation protein b | SAMN02910353_02125 | Not Available | - | 2423789 - 2425393 | 54923.6 |
| hypothetical protein | SAMN02910353_02126 | Not Available | - | 2425651 - 2426631 | 35791.1 |
| 2-aminoadipate transaminase | SAMN02910353_02127 | Not Available | + | 2426918 - 2428111 | 44607.6 |
| hypothetical protein | SAMN02910353_02128 | Not Available | + | 2428277 - 2428792 | 19368.6 |
| tryptophanyl-trna synthetase | SAMN02910353_02129 | Not Available | + | 2428805 - 2429806 | 37310.7 |
| tetrapyrrole methylase family protein / mazg family protein | SAMN02910353_02130 | Not Available | + | 2429951 - 2430760 | 30463.1 |
| dna-binding protein hu-beta | SAMN02910353_02131 | Not Available | + | 2430762 - 2431070 | 10880.3 |
| ribosomal 50s subunit-recycling heat shock protein, contains s4 domain | SAMN02910353_02132 | Not Available | + | 2431119 - 2431361 | 8904.86 |
| udp-glucose 4-epimerase | SAMN02910353_02133 | Not Available | - | 2431730 - 2432683 | 35689.8 |
| extracellular solute-binding protein | SAMN02910353_02134 | Not Available | - | 2432837 - 2434240 | 52646.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.