Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_02075 | Not Available | - | 2368005 - 2368517 | 19488.5 |
| uncharacterized protein | SAMN02910353_02076 | Not Available | - | 2368538 - 2369905 | 52112.0 |
| six-cysteine peptide sciff | SAMN02910353_02077 | Not Available | - | 2369980 - 2370117 | 4816.86 |
| atp-binding cassette, subfamily f, member 3 | SAMN02910353_02078 | Not Available | - | 2370697 - 2372622 | 73089.9 |
| dna-binding transcriptional regulator, laci/purr family | SAMN02910353_02079 | Not Available | + | 2373066 - 2375285 | 85116.4 |
| hypothetical protein | SAMN02910353_02080 | Not Available | - | 2375408 - 2375887 | 18013.7 |
| 1,4-alpha-glucan branching enzyme | SAMN02910353_02081 | Not Available | - | 2376102 - 2377958 | 72223.6 |
| oligopeptide transport system substrate-binding protein | SAMN02910353_02082 | Not Available | - | 2377993 - 2379663 | 61883.4 |
| d-alanyl-d-alanine carboxypeptidase | SAMN02910353_02083 | Not Available | - | 2379807 - 2380850 | 39310.7 |
| arac-type dna-binding protein | SAMN02910353_02084 | Not Available | - | 2381079 - 2381903 | 31152.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.