Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine aminotransferase apoenzyme | SAMN02910353_02045 | Not Available | - | 2329340 - 2330425 | 40264.6 |
| methionyl-trna synthetase | SAMN02910353_02046 | Not Available | - | 2330653 - 2332635 | 74481.5 |
| trna(ile)-lysidine synthase tils/mesj | SAMN02910353_02047 | Not Available | - | 2333010 - 2334128 | 42816.6 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN02910353_02048 | Not Available | + | 2334248 - 2335012 | 26498.2 |
| xylulokinase | SAMN02910353_02049 | Not Available | - | 2335169 - 2336692 | 54987.6 |
| xylose isomerase | SAMN02910353_02050 | Not Available | - | 2337123 - 2338445 | 49056.9 |
| hypothetical protein | SAMN02910353_02051 | Not Available | - | 2338775 - 2340007 | 46016.2 |
| vanz like family protein | SAMN02910353_02052 | Not Available | + | 2340236 - 2340742 | 18745.0 |
| putative sporulation protein ytaf | SAMN02910353_02053 | Not Available | + | 2340821 - 2341450 | 21575.4 |
| thiamine pyrophosphokinase | SAMN02910353_02054 | Not Available | - | 2341767 - 2342384 | 22633.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.