Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 9 | SAMN02910353_02013 | Not Available | + | 2288416 - 2290797 | 86667.2 |
| glycosyl hydrolase family 9 | SAMN02910353_02014 | Not Available | + | 2291154 - 2293445 | 81984.5 |
| endo-1,4-beta-xylanase | SAMN02910353_02015 | Not Available | + | 2293785 - 2295770 | 71749.9 |
| Trna-asn | Not Available | Not Available | + | 2296295 - 2296370 | Not Available |
| Trna-glu | Not Available | Not Available | + | 2296504 - 2296578 | Not Available |
| Trna-lys | Not Available | Not Available | + | 2296583 - 2296658 | Not Available |
| hypothetical protein | SAMN02910353_02021 | Not Available | + | 2297147 - 2297929 | 27470.8 |
| abc-type transport system, involved in lipoprotein release, permease component | SAMN02910353_02022 | Not Available | + | 2298207 - 2301560 | 122982.0 |
| abc-type lipoprotein export system, atpase component | SAMN02910353_02023 | Not Available | + | 2301588 - 2302796 | 43926.1 |
| dna-binding transcriptional regulator, laci/purr family | SAMN02910353_02024 | Not Available | - | 2302849 - 2306214 | 124792.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.