Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN02910353_01993 | Not Available | - | 2270444 - 2271184 | 26045.4 |
| enoyl-[acyl-carrier protein] reductase ii | SAMN02910353_01994 | Not Available | - | 2271531 - 2272457 | 32371.3 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN02910353_01995 | Not Available | - | 2272469 - 2273455 | 35547.3 |
| [acyl-carrier-protein] s-malonyltransferase | SAMN02910353_01996 | Not Available | + | 2273916 - 2274851 | 33656.4 |
| shikimate dehydrogenase | SAMN02910353_01997 | Not Available | + | 2274844 - 2275680 | 30019.2 |
| shikimate kinase | SAMN02910353_01998 | Not Available | + | 2275815 - 2276315 | 18005.6 |
| imidazolonepropionase | SAMN02910353_01999 | Not Available | + | 2276330 - 2277499 | 42277.5 |
| leucine rich repeat-containing protein | SAMN02910353_02000 | Not Available | + | 2277501 - 2278430 | 32914.7 |
| imp dehydrogenase | SAMN02910353_02001 | Not Available | + | 2278636 - 2280108 | 52036.2 |
| hypothetical protein | SAMN02910353_02002 | Not Available | - | 2280467 - 2281189 | 26786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.