Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_01933 | Not Available | + | 2225977 - 2227505 | 52521.1 |
| hypothetical protein | SAMN02910353_01934 | Not Available | + | 2227656 - 2228588 | 32661.8 |
| tetratricopeptide repeat-containing protein | SAMN02910353_01935 | Not Available | + | 2228647 - 2229765 | 42443.2 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01936 | Not Available | + | 2229954 - 2230661 | 27084.8 |
| signal transduction histidine kinase | SAMN02910353_01937 | Not Available | + | 2230731 - 2232206 | 55657.4 |
| serine protease do | SAMN02910353_01938 | Not Available | + | 2232237 - 2233652 | 50796.9 |
| putative membrane protein, tigr04086 family | SAMN02910353_01939 | Not Available | - | 2233649 - 2234047 | 13461.8 |
| preprotein translocase subunit yajc | SAMN02910353_01940 | Not Available | - | 2234103 - 2234603 | 18067.0 |
| large subunit ribosomal protein l17 | SAMN02910353_01941 | Not Available | - | 2234996 - 2235340 | 12751.7 |
| dna-directed rna polymerase subunit alpha | SAMN02910353_01942 | Not Available | - | 2235380 - 2236345 | 35453.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.