Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| yip1 domain-containing protein | SAMN02910353_01893 | Not Available | - | 2185143 - 2185772 | 24258.5 |
| hypothetical protein | SAMN02910353_01894 | Not Available | - | 2185750 - 2187438 | 61430.1 |
| abc-type glycerol-3-phosphate transport system, permease component | SAMN02910353_01895 | Not Available | - | 2187449 - 2188327 | 31965.4 |
| multiple sugar transport system permease protein | SAMN02910353_01896 | Not Available | - | 2188340 - 2189281 | 35348.0 |
| abc-type glycerol-3-phosphate transport system, substrate-binding protein | SAMN02910353_01897 | Not Available | - | 2189299 - 2192229 | 110316.0 |
| hypothetical protein | SAMN02910353_01898 | Not Available | + | 2192603 - 2192920 | 11865.5 |
| putative transcriptional regulator | SAMN02910353_01899 | Not Available | + | 2192925 - 2193131 | 7721.42 |
| abc-2 type transport system atp-binding protein | SAMN02910353_01900 | Not Available | + | 2193268 - 2194008 | 27191.2 |
| abc-2 type transport system permease protein | SAMN02910353_01901 | Not Available | + | 2193995 - 2195323 | 47804.4 |
| chaperonin groel | SAMN02910353_01902 | Not Available | - | 2195460 - 2197088 | 57478.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.