Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recg | SAMN02910353_01863 | Not Available | + | 2152846 - 2154882 | 75076.5 |
| cys-trna(pro)/cys-trna(cys) deacylase | SAMN02910353_01864 | Not Available | - | 2155249 - 2155725 | 17511.4 |
| hypothetical protein | SAMN02910353_01865 | Not Available | - | 2155718 - 2156341 | 23989.4 |
| cell fate regulator yaat, psp1 superfamily (controls sporulation, competence, biofilm development) | SAMN02910353_01866 | Not Available | - | 2156341 - 2157207 | 32265.6 |
| dna polymerase-3 subunit delta' | SAMN02910353_01867 | Not Available | - | 2157231 - 2158214 | 36072.7 |
| transcriptional regulator of competence genes, tfox/sxy family | SAMN02910353_01868 | Not Available | - | 2158225 - 2158539 | 11901.4 |
| arginine/lysine/ornithine decarboxylase | SAMN02910353_01869 | Not Available | - | 2158615 - 2159931 | 47225.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02910353_01870 | Not Available | - | 2159942 - 2160235 | 11423.9 |
| hypothetical protein | SAMN02910353_01871 | Not Available | - | 2160222 - 2160455 | 9220.12 |
| hypothetical protein | SAMN02910353_01872 | Not Available | + | 2160902 - 2163634 | 97576.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.