Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase (nadph/nadh) small chain | SAMN02910353_01853 | Not Available | - | 2140513 - 2141898 | 49002.8 |
| ferredoxin--nadp+ reductase | SAMN02910353_01854 | Not Available | - | 2141900 - 2142739 | 30664.4 |
| regulatory helix-turn-helix protein, lysr family | SAMN02910353_01855 | Not Available | - | 2143093 - 2144034 | 35380.1 |
| maltose o-acetyltransferase | SAMN02910353_01856 | Not Available | - | 2144052 - 2144648 | 21750.8 |
| d-alanine-d-alanine ligase | SAMN02910353_01857 | Not Available | - | 2144975 - 2146159 | 43782.0 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN02910353_01858 | Not Available | - | 2146300 - 2147985 | 61981.8 |
| hypothetical protein | SAMN02910353_01859 | Not Available | - | 2147997 - 2148398 | 15312.3 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN02910353_01860 | Not Available | - | 2148401 - 2149174 | 28894.6 |
| hypothetical protein | SAMN02910353_01861 | Not Available | + | 2149440 - 2150891 | 53702.4 |
| hypothetical protein | SAMN02910353_01862 | Not Available | + | 2150947 - 2152356 | 52500.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.