Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | SAMN02910353_01823 | Not Available | + | 2111100 - 2112185 | 41166.5 |
| helix-turn-helix domain-containing protein | SAMN02910353_01824 | Not Available | + | 2112421 - 2112654 | 8934.73 |
| relaxase/mobilisation nuclease domain-containing protein | SAMN02910353_01825 | Not Available | - | 2112900 - 2113409 | 19598.1 |
| hypothetical protein | SAMN02910353_01826 | Not Available | - | 2113397 - 2113669 | 10469.5 |
| protein of unknown function | SAMN02910353_01827 | Not Available | + | 2114065 - 2114349 | 10929.1 |
| putative amidoligase enzyme | SAMN02910353_01828 | Not Available | + | 2114405 - 2115520 | 43141.8 |
| hypothetical protein | SAMN02910353_01829 | Not Available | + | 2115520 - 2115690 | 6085.68 |
| glutamine amidotransferase domain-containing protein | SAMN02910353_01830 | Not Available | + | 2115692 - 2116666 | 37110.9 |
| site-specific dna recombinase | SAMN02910353_01831 | Not Available | + | 2116666 - 2117238 | 22182.7 |
| hypothetical protein | SAMN02910353_01832 | Not Available | - | 2117392 - 2118333 | 36199.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.