Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type i restriction enzyme, s subunit | SAMN02910353_01813 | Not Available | - | 2100199 - 2101521 | 50728.1 |
| n-6 dna methylase | SAMN02910353_01814 | Not Available | - | 2101518 - 2102693 | 44251.9 |
| hsdm n-terminal domain-containing protein | SAMN02910353_01815 | Not Available | - | 2103183 - 2103521 | 12859.5 |
| hypothetical protein | SAMN02910353_01816 | Not Available | - | 2103943 - 2104161 | 8569.44 |
| dna binding domain-containing protein, excisionase family | SAMN02910353_01817 | Not Available | - | 2104333 - 2104545 | 8195.04 |
| hypothetical protein | SAMN02910353_01818 | Not Available | + | 2104868 - 2105068 | 7794.37 |
| leucine rich repeat-containing protein | SAMN02910353_01819 | Not Available | - | 2105446 - 2108181 | 100727.0 |
| sh3 domain-containing protein | SAMN02910353_01820 | Not Available | - | 2108194 - 2109975 | 63580.2 |
| membrane-anchored protein yidd, putatitve component of membrane protein insertase oxa1/yidc/spoiiij | SAMN02910353_01821 | Not Available | - | 2109989 - 2110411 | 16011.4 |
| hypothetical protein | SAMN02910353_01822 | Not Available | - | 2110408 - 2110818 | 14969.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.