Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysophospholipase, alpha-beta hydrolase superfamily | SAMN02910353_01803 | Not Available | - | 2088504 - 2089646 | 43035.9 |
| n-acetylmuramoyl-l-alanine amidase | SAMN02910353_01804 | Not Available | - | 2089753 - 2090376 | 23011.0 |
| site-specific dna recombinase | SAMN02910353_01805 | Not Available | - | 2090441 - 2092012 | 60681.0 |
| hypothetical protein | SAMN02910353_01806 | Not Available | - | 2092047 - 2092166 | 4483.51 |
| aaa domain-containing protein | SAMN02910353_01807 | Not Available | + | 2092469 - 2093476 | 37532.7 |
| mobilisation protein (mobc) | SAMN02910353_01808 | Not Available | + | 2093788 - 2094099 | 11792.6 |
| relaxase/mobilisation nuclease domain-containing protein | SAMN02910353_01809 | Not Available | + | 2094099 - 2095421 | 49020.4 |
| dna binding domain-containing protein, excisionase family | SAMN02910353_01810 | Not Available | + | 2095733 - 2095927 | 7354.21 |
| phage integrase, n-terminal sam-like domain | SAMN02910353_01811 | Not Available | + | 2096035 - 2096700 | 25771.2 |
| type i restriction enzyme, r subunit | SAMN02910353_01812 | Not Available | - | 2097227 - 2100202 | 113634.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.