Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| act domain-containing protein | SAMN02910353_01783 | Not Available | + | 2066433 - 2066702 | 9667.88 |
| hypothetical protein | SAMN02910353_01784 | Not Available | + | 2066875 - 2068233 | 47216.8 |
| uncharacterized membrane protein yoak, upf0700 family | SAMN02910353_01785 | Not Available | + | 2068274 - 2068921 | 23753.4 |
| acetyltransferase (gnat) domain-containing protein | SAMN02910353_01786 | Not Available | + | 2068978 - 2069445 | 16948.1 |
| predicted kinase, aminoglycoside phosphotransferase (apt) family | SAMN02910353_01787 | Not Available | + | 2069435 - 2070364 | 34318.9 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01788 | Not Available | + | 2070766 - 2071434 | 24687.8 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN02910353_01789 | Not Available | + | 2071448 - 2073226 | 67497.8 |
| hypothetical protein | SAMN02910353_01790 | Not Available | - | 2073325 - 2073444 | 4378.82 |
| hypothetical protein | SAMN02910353_01791 | Not Available | - | 2073509 - 2074699 | 44422.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02910353_01792 | Not Available | - | 2074696 - 2075178 | 18686.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.