Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein phosphatase | SAMN02910353_01773 | Not Available | + | 2048626 - 2049381 | 28015.4 |
| stage iv sporulation protein a | SAMN02910353_01774 | Not Available | - | 2049566 - 2051041 | 54429.8 |
| lysm domain-containing protein | SAMN02910353_01775 | Not Available | - | 2051060 - 2052613 | 56921.4 |
| carbohydrate binding domain-containing protein | SAMN02910353_01776 | Not Available | + | 2052850 - 2055606 | 100339.0 |
| f5/8 type c domain-containing protein | SAMN02910353_01777 | Not Available | - | 2055674 - 2059117 | 125208.0 |
| glycosyl-hydrolase 97 c-terminal, oligomerisation | SAMN02910353_01778 | Not Available | - | 2059165 - 2062488 | 121195.0 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN02910353_01779 | Not Available | - | 2062743 - 2063606 | 30330.9 |
| aminotransferase | SAMN02910353_01780 | Not Available | - | 2063603 - 2064784 | 44016.4 |
| dna-binding transcriptional regulator, lrp family | SAMN02910353_01781 | Not Available | - | 2064787 - 2065266 | 17974.5 |
| histidinol-phosphatase (php family) | SAMN02910353_01782 | Not Available | - | 2065373 - 2066227 | 32204.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.