Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_01763 | Not Available | + | 2040697 - 2040894 | 7815.26 |
| lyzozyme m1 (1,4-beta-n-acetylmuramidase), gh25 family | SAMN02910353_01764 | Not Available | + | 2041027 - 2041719 | 25533.0 |
| branched-chain amino acid aminotransferase | SAMN02910353_01765 | Not Available | - | 2041820 - 2042887 | 39678.1 |
| hypothetical protein | SAMN02910353_01766 | Not Available | - | 2042950 - 2043081 | 4516.7 |
| radical sam enzyme, tigr04100 family | SAMN02910353_01767 | Not Available | - | 2043208 - 2043822 | 22668.1 |
| hypothetical protein | SAMN02910353_01768 | Not Available | - | 2043819 - 2044532 | 25010.9 |
| alanine racemase | SAMN02910353_01769 | Not Available | - | 2044543 - 2045679 | 41520.0 |
| uncharacterized spbc2 prophage-derived protein yoqj | SAMN02910353_01770 | Not Available | + | 2045789 - 2046478 | 25679.7 |
| transcriptional attenuator, lytr family | SAMN02910353_01771 | Not Available | + | 2046829 - 2047719 | 32717.9 |
| tatd dnase family protein | SAMN02910353_01772 | Not Available | + | 2047720 - 2048484 | 28301.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.