Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_01733 | Not Available | + | 2002716 - 2003645 | 33579.8 |
| winged helix-turn-helix dna-binding | SAMN02910353_01734 | Not Available | + | 2003849 - 2005072 | 45609.2 |
| hypothetical protein | SAMN02910353_01735 | Not Available | - | 2005119 - 2005298 | 7042.68 |
| phage shock protein a (pspa) family protein | SAMN02910353_01736 | Not Available | - | 2005315 - 2006049 | 27099.6 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01737 | Not Available | - | 2006195 - 2007367 | 44279.2 |
| hypothetical protein | SAMN02910353_01738 | Not Available | - | 2007410 - 2008504 | 40053.9 |
| phosphoserine phosphatase | SAMN02910353_01739 | Not Available | - | 2008511 - 2009122 | 22846.8 |
| protein of unknown function | SAMN02910353_01740 | Not Available | + | 2009423 - 2011621 | 74799.9 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN02910353_01741 | Not Available | + | 2012016 - 2014946 | 105408.0 |
| serine protease do | SAMN02910353_01742 | Not Available | + | 2015233 - 2016537 | 45958.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.