Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01683 | Not Available | - | 1945397 - 1946071 | 25223.4 |
| hypothetical protein | SAMN02910353_01684 | Not Available | - | 1946424 - 1946957 | 20190.7 |
| signal peptidase i | SAMN02910353_01685 | Not Available | + | 1947227 - 1947778 | 20266.3 |
| t surface-antigen of pili | SAMN02910353_01686 | Not Available | + | 1947821 - 1949311 | 52824.6 |
| sortase b | SAMN02910353_01687 | Not Available | + | 1949336 - 1950013 | 25481.1 |
| pilin isopeptide linkage domain-containing protein | SAMN02910353_01688 | Not Available | + | 1950034 - 1950783 | 27065.8 |
| fibro-slime domain-containing protein | SAMN02910353_01689 | Not Available | + | 1950820 - 1956438 | 210165.0 |
| intestinal mucin-2 | SAMN02910353_01690 | Not Available | - | 1956520 - 1957866 | 45480.9 |
| res domain-containing protein | SAMN02910353_01691 | Not Available | + | 1958029 - 1958844 | 31596.2 |
| s1 rna binding domain-containing protein | SAMN02910353_01692 | Not Available | - | 1959130 - 1960050 | 33232.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.