Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hpr(ser) kinase/phosphatase | SAMN02910353_01673 | Not Available | + | 1932122 - 1933081 | 36269.2 |
| udp-n-acetylmuramate dehydrogenase | SAMN02910353_01674 | Not Available | + | 1933099 - 1934004 | 32254.8 |
| upf0042 nucleotide-binding protein | SAMN02910353_01675 | Not Available | + | 1934022 - 1934894 | 33487.3 |
| hypothetical protein | SAMN02910353_01676 | Not Available | + | 1934946 - 1935860 | 34025.3 |
| dna polymerase-3 subunit alpha | SAMN02910353_01677 | Not Available | + | 1935850 - 1939254 | 126847.0 |
| 6-phosphofructokinase | SAMN02910353_01678 | Not Available | + | 1939408 - 1940370 | 34498.7 |
| site-specific dna recombinase | SAMN02910353_01679 | Not Available | - | 1940682 - 1942319 | 62970.0 |
| hypothetical protein | SAMN02910353_01680 | Not Available | - | 1942417 - 1942578 | 6131.34 |
| hypothetical protein | SAMN02910353_01681 | Not Available | - | 1943276 - 1943713 | 16235.9 |
| signal transduction histidine kinase | SAMN02910353_01682 | Not Available | - | 1944411 - 1945400 | 37297.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.