Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_01653 | Not Available | + | 1904431 - 1905024 | 20425.4 |
| uncharacterized membrane protein yesl | SAMN02910353_01654 | Not Available | + | 1905043 - 1905978 | 35013.9 |
| signal transduction histidine kinase | SAMN02910353_01655 | Not Available | - | 1906519 - 1907607 | 41055.5 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01656 | Not Available | - | 1907594 - 1908274 | 25895.1 |
| leucine rich repeat-containing protein | SAMN02910353_01657 | Not Available | + | 1908913 - 1912116 | 112180.0 |
| pectate lyase | SAMN02910353_01658 | Not Available | - | 1912216 - 1915698 | 122848.0 |
| hypothetical protein | SAMN02910353_01659 | Not Available | - | 1915956 - 1917521 | 59064.6 |
| sigma-70 region 2 | SAMN02910353_01660 | Not Available | - | 1917593 - 1918150 | 20409.4 |
| gntr family transcriptional regulator | SAMN02910353_01661 | Not Available | + | 1918587 - 1918964 | 13643.2 |
| abc-2 type transport system atp-binding protein | SAMN02910353_01662 | Not Available | + | 1918961 - 1919890 | 34681.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.