Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamine amidotransferase domain-containing protein | SAMN02910353_01633 | Not Available | + | 1880213 - 1881187 | 37075.9 |
| site-specific dna recombinase | SAMN02910353_01634 | Not Available | + | 1881187 - 1881759 | 22163.7 |
| hypothetical protein | SAMN02910353_01635 | Not Available | - | 1881898 - 1882842 | 36619.5 |
| dna helicase hera, contains has-barrel and atpase domains | SAMN02910353_01636 | Not Available | + | 1883152 - 1886169 | 112424.0 |
| hypothetical protein | SAMN02910353_01637 | Not Available | + | 1886281 - 1886538 | 9728.68 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01638 | Not Available | - | 1887079 - 1888731 | 62923.4 |
| spore coat protein jb | SAMN02910353_01639 | Not Available | - | 1889331 - 1889579 | 9962.7 |
| spore coat associated protein ja (cotja) | SAMN02910353_01640 | Not Available | - | 1889579 - 1889830 | 9082.75 |
| 6-phosphofructokinase 1 | SAMN02910353_01641 | Not Available | + | 1890115 - 1891332 | 44555.8 |
| stage v sporulation protein b | SAMN02910353_01642 | Not Available | + | 1891598 - 1893130 | 54009.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.