Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_01573 | Not Available | - | 1797217 - 1797822 | 21258.0 |
| nad(p)h-hydrate epimerase | SAMN02910353_01574 | Not Available | - | 1797903 - 1799603 | 60747.6 |
| hypothetical protein | SAMN02910353_01575 | Not Available | - | 1799636 - 1800190 | 20775.0 |
| hypothetical protein | SAMN02910353_01576 | Not Available | - | 1800448 - 1800585 | 4801.95 |
| atp-dependent clp protease atp-binding subunit clpc | SAMN02910353_01577 | Not Available | + | 1800802 - 1803144 | 85404.1 |
| beta-xylosidase, gh43 family | SAMN02910353_01578 | Not Available | - | 1803207 - 1806122 | 107499.0 |
| o-glycosyl hydrolase | SAMN02910353_01579 | Not Available | + | 1806399 - 1808597 | 80539.8 |
| hypothetical protein | SAMN02910353_01580 | Not Available | - | 1808674 - 1809261 | 21448.2 |
| phenylalanyl-trna synthetase, alpha subunit | SAMN02910353_01581 | Not Available | + | 1809812 - 1810840 | 38410.4 |
| phenylalanyl-trna synthetase beta subunit | SAMN02910353_01582 | Not Available | + | 1810994 - 1813450 | 90847.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.