Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transposase (or an inactivated derivative) | SAMN02910353_01494 | Not Available | - | 1718395 - 1719621 | 46653.9 |
| hypothetical protein | SAMN02910353_01495 | Not Available | + | 1719775 - 1720080 | 11388.7 |
| hydroxylamine reductase | SAMN02910353_01496 | Not Available | - | 1720040 - 1721668 | 59155.9 |
| 4fe-4s binding domain-containing protein | SAMN02910353_01497 | Not Available | - | 1721683 - 1722378 | 25279.5 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN02910353_01498 | Not Available | + | 1722465 - 1723130 | 24903.1 |
| protein of unknown function | SAMN02910353_01499 | Not Available | - | 1723360 - 1723872 | 19247.0 |
| zn-dependent peptidase imma, m78 family | SAMN02910353_01500 | Not Available | - | 1723872 - 1725044 | 44699.4 |
| hypothetical protein | SAMN02910353_01540 | Not Available | - | 1758626 - 1759186 | 20625.4 |
| 5-methylcytosine-specific restriction enzyme a | SAMN02910353_01541 | Not Available | - | 1759456 - 1759806 | 13360.0 |
| protein of unknown function | SAMN02910353_01542 | Not Available | - | 1759890 - 1760324 | 16882.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.