Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| stage ii sporulation protein ga (sporulation sigma-e factor processing peptidase) | SAMN02910353_01484 | Not Available | + | 1705813 - 1706595 | 28283.2 |
| rna polymerase sporulation-specific sigma factor | SAMN02910353_01485 | Not Available | + | 1706609 - 1707307 | 26322.0 |
| single-stranded-dna-specific exonuclease | SAMN02910353_01486 | Not Available | + | 1707537 - 1709594 | 74453.0 |
| gtp pyrophosphokinase | SAMN02910353_01487 | Not Available | + | 1709591 - 1711888 | 87721.3 |
| glyoxylase, beta-lactamase superfamily ii | SAMN02910353_01488 | Not Available | + | 1711901 - 1712518 | 22643.1 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN02910353_01489 | Not Available | + | 1712523 - 1713995 | 55061.0 |
| 23s rrna (uracil1939-c5)-methyltransferase | SAMN02910353_01490 | Not Available | + | 1713959 - 1715317 | 49078.1 |
| mobile rsam pair marr family regulator | SAMN02910353_01491 | Not Available | + | 1716044 - 1716475 | 16569.1 |
| radical sam mobile pair protein a | SAMN02910353_01492 | Not Available | + | 1716472 - 1717161 | 26884.1 |
| radical sam mobile pair protein b | SAMN02910353_01493 | Not Available | + | 1717149 - 1718060 | 34702.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.