Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ecf transporter s component, folate family | SAMN02910353_01413 | Not Available | - | 1631446 - 1632039 | 21097.6 |
| hypothetical protein | SAMN02910353_01415 | Not Available | + | 1632494 - 1633312 | 30499.2 |
| indolepyruvate ferredoxin oxidoreductase alpha subunit | SAMN02910353_01416 | Not Available | + | 1633527 - 1635257 | 62435.5 |
| hypothetical protein | SAMN02910353_01417 | Not Available | + | 1635388 - 1635549 | 6364.97 |
| hypothetical protein | SAMN02910353_01418 | Not Available | + | 1635559 - 1635960 | 15440.5 |
| indolepyruvate ferredoxin oxidoreductase beta subunit | SAMN02910353_01419 | Not Available | + | 1635980 - 1636561 | 20553.1 |
| hypothetical protein | SAMN02910353_01420 | Not Available | + | 1636604 - 1638118 | 56063.2 |
| phenylacetate-coa ligase | SAMN02910353_01421 | Not Available | + | 1638196 - 1639518 | 48804.8 |
| protein of unknown function | SAMN02910353_01422 | Not Available | + | 1639579 - 1639794 | 8212.63 |
| uncharacterized conserved protein, contains tandem act domains | SAMN02910353_01423 | Not Available | + | 1639832 - 1640266 | 15949.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.