Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| enolase | SAMN02910353_01393 | Not Available | + | 1603269 - 1604567 | 46045.9 |
| abc-type glycerol-3-phosphate transport system, substrate-binding protein | SAMN02910353_01394 | Not Available | - | 1605086 - 1607275 | 81358.9 |
| cysteine desulfurase family protein | SAMN02910353_01395 | Not Available | + | 1607833 - 1608954 | 39675.5 |
| diadenylate cyclase | SAMN02910353_01396 | Not Available | + | 1609215 - 1610093 | 32413.9 |
| ybbr domain-containing protein | SAMN02910353_01397 | Not Available | + | 1610090 - 1611376 | 47693.2 |
| uncharacterized conserved protein yjdb, contains ig-like domain | SAMN02910353_01398 | Not Available | + | 1611805 - 1613919 | 73700.3 |
| nitt/taut family transport system substrate-binding protein | SAMN02910353_01399 | Not Available | - | 1614044 - 1615204 | 42053.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02910353_01400 | Not Available | + | 1615716 - 1616276 | 21492.5 |
| hypothetical protein | SAMN02910353_01401 | Not Available | + | 1616269 - 1618470 | 83007.0 |
| protein of unknown function | SAMN02910353_01402 | Not Available | + | 1618767 - 1621019 | 82688.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.