Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN02910353_01383 | Not Available | + | 1590557 - 1591765 | 44066.6 |
| putative abc transport system atp-binding protein | SAMN02910353_01384 | Not Available | + | 1591821 - 1592513 | 25602.6 |
| ftsx-like permease family protein | SAMN02910353_01385 | Not Available | + | 1592510 - 1595323 | 104103.0 |
| hypothetical protein | SAMN02910353_01386 | Not Available | + | 1595320 - 1595553 | 8686.49 |
| helix-turn-helix domain-containing protein | SAMN02910353_01387 | Not Available | - | 1595440 - 1595826 | 14835.7 |
| hypothetical protein | SAMN02910353_01388 | Not Available | - | 1596054 - 1596323 | 10259.8 |
| rhamnogalacturonan endolyase | SAMN02910353_01389 | Not Available | + | 1596412 - 1599165 | 98315.2 |
| atpase, p-type (transporting), had superfamily, subfamily ic/heavy metal translocating p-type atpase | SAMN02910353_01390 | Not Available | - | 1599589 - 1601658 | 75296.4 |
| hypothetical protein | SAMN02910353_01391 | Not Available | - | 1601708 - 1602007 | 10873.0 |
| arac-type dna-binding protein | SAMN02910353_01392 | Not Available | - | 1602113 - 1602934 | 30667.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.