Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytidylate kinase | SAMN02910353_01373 | Not Available | - | 1580401 - 1581063 | 24271.1 |
| putative abc-transporter type iv | SAMN02910353_01374 | Not Available | - | 1581164 - 1581694 | 20037.7 |
| hypothetical protein | SAMN02910353_01375 | Not Available | - | 1581701 - 1582876 | 42848.7 |
| protein of unknown function | SAMN02910353_01376 | Not Available | - | 1582911 - 1583126 | 7982.14 |
| metal-dependent hydrolase, beta-lactamase superfamily ii | SAMN02910353_01377 | Not Available | - | 1583123 - 1583893 | 27716.6 |
| uncharacterized radical sam protein ygiq | SAMN02910353_01378 | Not Available | - | 1583977 - 1585911 | 73097.8 |
| hypothetical protein | SAMN02910353_01379 | Not Available | - | 1585951 - 1586508 | 20761.8 |
| dna segregation atpase ftsk/spoiiie, s-dna-t family | SAMN02910353_01380 | Not Available | - | 1586513 - 1589086 | 92921.5 |
| atp-dependent protease clpp, protease subunit | SAMN02910353_01381 | Not Available | - | 1589114 - 1589776 | 23747.7 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01382 | Not Available | + | 1589973 - 1590578 | 22555.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.