Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01322 | Not Available | - | 1526399 - 1528276 | 70782.2 |
| methionine adenosyltransferase | SAMN02910353_01324 | Not Available | + | 1528697 - 1529881 | 42883.0 |
| arac family transcriptional regulator, arabinose operon regulatory protein | SAMN02910353_01325 | Not Available | - | 1530015 - 1530797 | 29914.7 |
| dna-3-methyladenine glycosylase | SAMN02910353_01326 | Not Available | - | 1530801 - 1531316 | 19432.0 |
| predicted component of the ribosome quality control (rqc) complex, yloa/tae2 family, contains fibronectin-binding (fbpa) and duf814 domains | SAMN02910353_01327 | Not Available | - | 1531313 - 1533064 | 65513.6 |
| aminoglycoside 3-n-acetyltransferase | SAMN02910353_01328 | Not Available | - | 1533069 - 1533815 | 27220.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN02910353_01329 | Not Available | - | 1533825 - 1534724 | 34441.1 |
| 23s rrna (guanine745-n1)-methyltransferase | SAMN02910353_01330 | Not Available | - | 1534735 - 1535556 | 30835.1 |
| dinuclear metal center protein, ybgi/sa1388 family | SAMN02910353_01331 | Not Available | - | 1535567 - 1537003 | 52496.4 |
| cxxc-x17-cxxc domain-containing protein | SAMN02910353_01332 | Not Available | - | 1537071 - 1537349 | 10215.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.