Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN02910353_01292 | Not Available | + | 1470557 - 1471912 | 49238.4 |
| carboxyl-terminal processing protease | SAMN02910353_01293 | Not Available | + | 1472291 - 1473454 | 42327.0 |
| putative abc transport system atp-binding protein | SAMN02910353_01294 | Not Available | + | 1473768 - 1474481 | 26397.7 |
| ftsx-like permease family protein | SAMN02910353_01295 | Not Available | + | 1474468 - 1477860 | 126185.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01296 | Not Available | + | 1477944 - 1478618 | 25241.4 |
| signal transduction histidine kinase | SAMN02910353_01297 | Not Available | + | 1478615 - 1479604 | 37176.1 |
| hypothetical protein | SAMN02910353_01298 | Not Available | + | 1480028 - 1480189 | 6046.3 |
| site-specific dna recombinase | SAMN02910353_01299 | Not Available | + | 1480287 - 1481900 | 62243.4 |
| phosphoglucomutase | SAMN02910353_01300 | Not Available | - | 1482070 - 1483782 | 63402.7 |
| dna repair protein rada/sms | SAMN02910353_01301 | Not Available | - | 1484155 - 1485525 | 49067.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.