Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycogen operon protein | SAMN02910353_01282 | Not Available | - | 1455768 - 1457843 | 78329.2 |
| cardiolipin synthase | SAMN02910353_01283 | Not Available | - | 1457959 - 1459527 | 59859.4 |
| galactokinase | SAMN02910353_01284 | Not Available | - | 1459710 - 1460996 | 45765.2 |
| beta-1,4-mannooligosaccharide/beta-1, 4-mannosyl-n-acetylglucosamine phosphorylase | SAMN02910353_01285 | Not Available | + | 1461432 - 1462451 | 38695.7 |
| d-alanine-d-alanine ligase | SAMN02910353_01286 | Not Available | + | 1462833 - 1463906 | 38730.4 |
| uncharacterized beta-barrel protein ywib, duf1934 family | SAMN02910353_01287 | Not Available | + | 1463906 - 1464322 | 15407.0 |
| arginyl-trna synthetase | SAMN02910353_01288 | Not Available | + | 1464460 - 1466226 | 65736.7 |
| carbohydrate diacid regulator | SAMN02910353_01289 | Not Available | + | 1466503 - 1467588 | 40867.1 |
| cell division transport system atp-binding protein | SAMN02910353_01290 | Not Available | + | 1468042 - 1468866 | 29701.7 |
| cell division transport system permease protein | SAMN02910353_01291 | Not Available | + | 1468863 - 1469768 | 33605.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.