Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atpase family associated with various cellular activities (aaa) | SAMN02910353_01272 | Not Available | - | 1443747 - 1444682 | 34558.1 |
| hypothetical protein | SAMN02910353_01273 | Not Available | - | 1444657 - 1444812 | 5798.38 |
| site-specific recombinase xerd | SAMN02910353_01274 | Not Available | - | 1444907 - 1446046 | 43528.2 |
| hypothetical protein | SAMN02910353_01275 | Not Available | + | 1446378 - 1448702 | 89251.0 |
| site-specific dna recombinase | SAMN02910353_01276 | Not Available | + | 1448932 - 1450395 | 56308.6 |
| spore coat protein jc | SAMN02910353_01277 | Not Available | + | 1450379 - 1451014 | 23888.6 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01278 | Not Available | - | 1451084 - 1452163 | 41287.9 |
| duf218 domain-containing protein | SAMN02910353_01279 | Not Available | + | 1452526 - 1454034 | 56108.0 |
| d-alanyl-d-alanine carboxypeptidase | SAMN02910353_01280 | Not Available | - | 1454079 - 1455179 | 40879.3 |
| hypothetical protein | SAMN02910353_01281 | Not Available | - | 1455212 - 1455391 | 6477.41 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.