Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tspo and mbr related proteins | SAMN02910353_01212 | Not Available | + | 1382319 - 1382789 | 17163.3 |
| abc-2 type transport system permease protein | SAMN02910353_01213 | Not Available | - | 1382981 - 1384162 | 43320.1 |
| abc-2 type transport system permease protein | SAMN02910353_01214 | Not Available | - | 1384149 - 1385279 | 41341.2 |
| abc-2 type transport system atp-binding protein | SAMN02910353_01215 | Not Available | - | 1385383 - 1386333 | 35696.7 |
| hypothetical protein | SAMN02910353_01216 | Not Available | - | 1386533 - 1387069 | 20158.0 |
| hypothetical protein | SAMN02910353_01217 | Not Available | - | 1387369 - 1388595 | 43486.9 |
| protein phosphatase 2c | SAMN02910353_01218 | Not Available | - | 1388658 - 1389572 | 33983.9 |
| uncharacterized conserved protein yegl, contains vwa domain of tery type | SAMN02910353_01219 | Not Available | - | 1389621 - 1390463 | 30275.7 |
| protein kinase domain-containing protein | SAMN02910353_01220 | Not Available | - | 1390491 - 1391834 | 50506.0 |
| leucine rich repeat-containing protein | SAMN02910353_01221 | Not Available | - | 1391877 - 1392914 | 38996.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.