Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glucose-1-phosphate adenylyltransferase | SAMN02910353_01202 | Not Available | + | 1364228 - 1365352 | 41515.6 |
| starch synthase | SAMN02910353_01203 | Not Available | + | 1365371 - 1366792 | 54116.7 |
| beta-xylosidase | SAMN02910353_01204 | Not Available | + | 1367175 - 1371104 | 143622.0 |
| fn3-like domain-containing protein | SAMN02910353_01205 | Not Available | + | 1371517 - 1376169 | 169829.0 |
| hypothetical protein | SAMN02910353_01206 | Not Available | + | 1376194 - 1376991 | 30319.1 |
| nicotinamidase-related amidase | SAMN02910353_01207 | Not Available | + | 1377047 - 1377583 | 19639.8 |
| nad+ synthase | SAMN02910353_01208 | Not Available | + | 1377600 - 1378349 | 27208.5 |
| putative gtp pyrophosphokinase | SAMN02910353_01209 | Not Available | - | 1378441 - 1379151 | 27706.2 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN02910353_01210 | Not Available | - | 1379220 - 1381187 | 74999.4 |
| hypothetical protein | SAMN02910353_01211 | Not Available | + | 1381449 - 1382111 | 25368.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.