Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate kinase | SAMN02910353_01182 | Not Available | - | 1337897 - 1339117 | 42639.4 |
| hypothetical protein | SAMN02910353_01183 | Not Available | + | 1339383 - 1339784 | 15345.2 |
| indole-3-glycerol phosphate synthase | SAMN02910353_01184 | Not Available | + | 1339790 - 1340572 | 28785.6 |
| hypothetical protein | SAMN02910353_01185 | Not Available | - | 1340649 - 1342712 | 76114.4 |
| hypothetical protein | SAMN02910353_01186 | Not Available | - | 1342732 - 1343571 | 30349.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN02910353_01187 | Not Available | - | 1343558 - 1344115 | 21706.7 |
| acetyltransferase (gnat) family protein | SAMN02910353_01188 | Not Available | + | 1344292 - 1344774 | 18479.2 |
| lincosamide and streptogramin a transport system atp-binding/permease protein | SAMN02910353_01189 | Not Available | + | 1345087 - 1346613 | 57609.2 |
| protein of unknown function | SAMN02910353_01190 | Not Available | - | 1346702 - 1347808 | 41982.2 |
| transcriptional regulator, tetr family | SAMN02910353_01191 | Not Available | - | 1348356 - 1348913 | 21311.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.