Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cation:h+ antiporter | SAMN02910353_01162 | Not Available | + | 1311778 - 1312707 | 32639.6 |
| nicotinamidase-related amidase | SAMN02910353_01163 | Not Available | + | 1312719 - 1313231 | 19021.2 |
| hypothetical protein | SAMN02910353_01164 | Not Available | - | 1313292 - 1314332 | 39543.1 |
| nicotinamide mononucleotide transporter pnuc | SAMN02910353_01165 | Not Available | + | 1314716 - 1315432 | 26372.7 |
| oligogalacturonide transport system substrate-binding protein | SAMN02910353_01166 | Not Available | - | 1315387 - 1316664 | 47046.5 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01167 | Not Available | - | 1316661 - 1318172 | 56289.9 |
| hypothetical protein | SAMN02910353_01168 | Not Available | + | 1318453 - 1321695 | 120444.0 |
| rhamnogalacturonan endolyase | SAMN02910353_01169 | Not Available | + | 1321882 - 1324656 | 100528.0 |
| abc-type glycerol-3-phosphate transport system, substrate-binding protein | SAMN02910353_01170 | Not Available | - | 1324703 - 1326961 | 84363.4 |
| abc-type glycerol-3-phosphate transport system, substrate-binding protein | SAMN02910353_01171 | Not Available | - | 1327006 - 1329258 | 84018.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.