Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| adenosylhomocysteinase | SAMN02910353_01152 | Not Available | + | 1299998 - 1301245 | 45504.7 |
| hd domain-containing protein | SAMN02910353_01153 | Not Available | + | 1301480 - 1303594 | 78483.4 |
| arsenate reductase | SAMN02910353_01154 | Not Available | - | 1303695 - 1304042 | 13441.5 |
| dna ligase (nad+) | SAMN02910353_01155 | Not Available | - | 1304055 - 1306037 | 72666.9 |
| sporulation initiation factor spo0a c terminal | SAMN02910353_01156 | Not Available | + | 1306419 - 1307138 | 27155.2 |
| rna polymerase sporulation-specific sigma factor | SAMN02910353_01157 | Not Available | + | 1307200 - 1307886 | 26105.4 |
| cytidylate kinase | SAMN02910353_01158 | Not Available | - | 1307981 - 1308574 | 22739.3 |
| na+/h+ antiporter nhad | SAMN02910353_01159 | Not Available | - | 1308590 - 1309951 | 49051.8 |
| aminoglycoside 6'-n-acetyltransferase i | SAMN02910353_01160 | Not Available | + | 1310571 - 1311011 | 17045.3 |
| glycosyl transferase family 2 | SAMN02910353_01161 | Not Available | + | 1311008 - 1311763 | 28148.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.