Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna nucleotidyltransferase (cca-adding enzyme) | SAMN02910353_01081 | Not Available | + | 1220116 - 1221435 | 49907.5 |
| pyruvate formate lyase activating enzyme | SAMN02910353_01082 | Not Available | + | 1221432 - 1222181 | 28069.7 |
| l-lactate dehydrogenase | SAMN02910353_01083 | Not Available | + | 1222268 - 1223221 | 34836.0 |
| transglutaminase-like superfamily protein | SAMN02910353_01084 | Not Available | + | 1223280 - 1224365 | 40831.4 |
| transglutaminase-like superfamily protein | SAMN02910353_01085 | Not Available | + | 1224367 - 1225464 | 40722.3 |
| dna gyrase subunit b | SAMN02910353_01086 | Not Available | + | 1225627 - 1227606 | 75597.4 |
| dna gyrase subunit a | SAMN02910353_01087 | Not Available | + | 1227661 - 1229904 | 84570.2 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN02910353_01088 | Not Available | + | 1229991 - 1231829 | 67529.0 |
| pectate lyase | SAMN02910353_01089 | Not Available | + | 1232118 - 1235576 | 125065.0 |
| Trna-val | Not Available | Not Available | + | 1235782 - 1235857 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.