Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase | SAMN02910353_01061 | Not Available | + | 1192287 - 1193162 | 32785.9 |
| sensor histidine kinase yesm | SAMN02910353_01062 | Not Available | - | 1193203 - 1194513 | 49830.6 |
| two component transcriptional regulator, lyttr family | SAMN02910353_01063 | Not Available | - | 1194510 - 1195217 | 27163.0 |
| hypothetical protein | SAMN02910353_01064 | Not Available | - | 1195195 - 1196136 | 36645.1 |
| repeat domain (list_bact_rpt) | SAMN02910353_01065 | Not Available | - | 1196358 - 1201541 | 190031.0 |
| hypothetical protein | SAMN02910353_01066 | Not Available | - | 1201561 - 1204359 | 94583.8 |
| hypothetical protein | SAMN02910353_01067 | Not Available | - | 1204346 - 1205401 | 37472.6 |
| acetyl-coa synthetase | SAMN02910353_01068 | Not Available | - | 1205612 - 1207288 | 63490.4 |
| helix-turn-helix domain-containing protein | SAMN02910353_01069 | Not Available | - | 1207306 - 1207851 | 20730.6 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_01070 | Not Available | + | 1208068 - 1209738 | 63201.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.