Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | SAMN02910353_01041 | Not Available | - | 1166509 - 1167930 | 51404.4 |
| response regulator nast | SAMN02910353_01042 | Not Available | - | 1167942 - 1168523 | 22053.0 |
| glutamine synthetase | SAMN02910353_01043 | Not Available | - | 1168536 - 1169813 | 47850.3 |
| glutamate synthase (nadph/nadh) small chain | SAMN02910353_01044 | Not Available | - | 1169825 - 1171312 | 53933.2 |
| glutamate synthase (ferredoxin) | SAMN02910353_01045 | Not Available | - | 1171316 - 1175842 | 165013.0 |
| ammonium transporter, amt family | SAMN02910353_01046 | Not Available | + | 1176265 - 1178073 | 64213.0 |
| ctp synthase | SAMN02910353_01047 | Not Available | + | 1178185 - 1179780 | 59228.4 |
| glutamine synthetase | SAMN02910353_01048 | Not Available | + | 1179800 - 1181887 | 77257.7 |
| diaminopimelate epimerase | SAMN02910353_01049 | Not Available | + | 1181893 - 1182738 | 30774.6 |
| ll-diaminopimelate aminotransferase apoenzyme | SAMN02910353_01050 | Not Available | + | 1182731 - 1183933 | 44690.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.