Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| multimeric flavodoxin wrba | SAMN02910353_01021 | Not Available | + | 1150586 - 1151128 | 19850.7 |
| flavodoxin | SAMN02910353_01022 | Not Available | + | 1151148 - 1151633 | 17526.8 |
| quinol monooxygenase ygin | SAMN02910353_01023 | Not Available | + | 1151649 - 1151981 | 12830.1 |
| 4-carboxymuconolactone decarboxylase | SAMN02910353_01024 | Not Available | + | 1151990 - 1152745 | 28238.8 |
| putative hydrolases of hd superfamily | SAMN02910353_01025 | Not Available | - | 1152849 - 1153415 | 21826.8 |
| calcineurin-like phosphoesterase | SAMN02910353_01026 | Not Available | - | 1153671 - 1155707 | 72915.5 |
| hypothetical protein | SAMN02910353_01027 | Not Available | - | 1155704 - 1156234 | 20071.9 |
| signal transduction histidine kinase | SAMN02910353_01028 | Not Available | - | 1156255 - 1157247 | 36725.3 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01029 | Not Available | - | 1157244 - 1157918 | 24495.4 |
| putative abc transport system atp-binding protein | SAMN02910353_01030 | Not Available | + | 1158093 - 1158779 | 25521.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.