Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| predicted dna-binding protein, mmcq/yjbr family | SAMN02910353_01011 | Not Available | - | 1140548 - 1141300 | 28960.9 |
| signal transduction histidine kinase | SAMN02910353_01012 | Not Available | - | 1141445 - 1142905 | 54777.9 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01013 | Not Available | - | 1142895 - 1143569 | 24919.2 |
| protein of unknown function | SAMN02910353_01014 | Not Available | - | 1143641 - 1144960 | 44897.8 |
| hypothetical protein | SAMN02910353_01015 | Not Available | - | 1145340 - 1145696 | 12560.4 |
| protein gp37 | SAMN02910353_01016 | Not Available | - | 1145854 - 1146729 | 34191.8 |
| dna-binding transcriptional regulator, lysr family | SAMN02910353_01017 | Not Available | + | 1147152 - 1148039 | 33417.5 |
| hypothetical protein | SAMN02910353_01018 | Not Available | + | 1148129 - 1148374 | 9203.24 |
| flavodoxin | SAMN02910353_01019 | Not Available | + | 1148371 - 1149558 | 43488.6 |
| hypothetical protein | SAMN02910353_01020 | Not Available | + | 1149576 - 1150574 | 37075.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.