Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_01001 | Not Available | + | 1129281 - 1129961 | 25560.9 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN02910353_01002 | Not Available | + | 1129995 - 1131989 | 73391.2 |
| dna recombination protein rmuc | SAMN02910353_01003 | Not Available | - | 1132030 - 1133268 | 45837.3 |
| pyruvate phosphate dikinase | SAMN02910353_01004 | Not Available | + | 1133650 - 1136277 | 95790.9 |
| 7, 8-dihydropterin-6-yl-methyl-4-(beta-d- ribofuranosyl)aminobenzene 5'-phosphate synthase | SAMN02910353_01005 | Not Available | - | 1136452 - 1137261 | 29994.0 |
| predicted dna-binding protein, upf0251 family | SAMN02910353_01006 | Not Available | - | 1137261 - 1137989 | 26319.0 |
| chromate transporter | SAMN02910353_01007 | Not Available | + | 1138119 - 1138682 | 20622.1 |
| chromate transporter | SAMN02910353_01008 | Not Available | + | 1138669 - 1139235 | 19587.9 |
| arsr family transcriptional regulator | SAMN02910353_01009 | Not Available | + | 1139313 - 1139621 | 11585.2 |
| c_gcaxxg_c_c family probable redox protein | SAMN02910353_01010 | Not Available | + | 1139696 - 1140139 | 15927.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.