Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate--l-alanine ligase | SAMN02910353_00971 | Not Available | - | 1092681 - 1094108 | 52301.4 |
| stage v sporulation protein g | SAMN02910353_00972 | Not Available | + | 1094421 - 1094723 | 11396.5 |
| adp-ribose pyrophosphatase | SAMN02910353_00973 | Not Available | - | 1094801 - 1095337 | 20078.0 |
| membrane protein yfho | SAMN02910353_00974 | Not Available | - | 1095347 - 1097869 | 95815.6 |
| pyridoxine kinase | SAMN02910353_00975 | Not Available | + | 1098012 - 1098845 | 30302.1 |
| hypothetical protein | SAMN02910353_00976 | Not Available | + | 1098959 - 1099636 | 23527.5 |
| hypothetical protein | SAMN02910353_00977 | Not Available | + | 1099692 - 1100462 | 28098.9 |
| uncharacterized conserved protein ykwd, contains cap (csp/antigen 5/pr1) domain | SAMN02910353_00978 | Not Available | - | 1100641 - 1101432 | 28523.5 |
| large subunit ribosomal protein l7/l12 | SAMN02910353_00979 | Not Available | - | 1101630 - 1102004 | 12781.4 |
| large subunit ribosomal protein l10 | SAMN02910353_00980 | Not Available | - | 1102080 - 1102592 | 18208.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.