Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| oligogalacturonide transport system permease protein | SAMN02910353_00941 | Not Available | - | 1055079 - 1055906 | 30459.1 |
| oligogalacturonide transport system permease protein | SAMN02910353_00942 | Not Available | - | 1055903 - 1056796 | 32635.6 |
| oligogalacturonide transport system substrate-binding protein | SAMN02910353_00943 | Not Available | - | 1056793 - 1058103 | 47567.9 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_00944 | Not Available | + | 1058896 - 1060269 | 50910.1 |
| hypothetical protein | SAMN02910353_00945 | Not Available | + | 1060526 - 1063393 | 105573.0 |
| conserved repeat domain-containing protein | SAMN02910353_00946 | Not Available | - | 1063473 - 1064339 | 29614.1 |
| o-antigen ligase | SAMN02910353_00947 | Not Available | - | 1064543 - 1066012 | 52460.7 |
| m6 family metalloprotease domain-containing protein | SAMN02910353_00948 | Not Available | - | 1066034 - 1067692 | 61376.1 |
| ribonucrease y | SAMN02910353_00949 | Not Available | - | 1067754 - 1069331 | 58825.6 |
| hypothetical protein | SAMN02910353_00950 | Not Available | + | 1069872 - 1070291 | 15582.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.