Alistipes shahii

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes shahii is a Gram-negative bacterium characterized by the presence of flagella, which contribute to its motility. This species exhibits a unique genomic structure with two replicons, indicating a potentially complex evolutionary background. The organism is cataloged under two accession numbers, CP102253.1 and FP929032.1, which provide a reference for its genetic material in genomic databases. The Gram-negative classification of Alistipes shahii suggests that it possesses an outer membrane containing lipopolysaccharides, a feature that can affect its interaction with the environment and host organisms. The presence of flagella may enhance its ability to navigate through various environments, potentially allowing it to colonize distinct ecological niches. Biologically, Alistipes shahii is part of the human gut microbiota and may play a role in human health, particularly in the context of gut microbial balance and function. Understanding the characteristics of this bacterium, including its motility and genomic structure, can provide insights into its ecological role within the microbiome and its potential implications for human health. Further research into its interactions and functions could elucidate its significance in health and disease states.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes shahii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes shahii , Complete Genome

Gene Summary

Adenine Count

812106 bp

Thymine Count

813877 bp

Guanine Count

1089895 bp

Cytosine Count

1093740 bp

Genome Length

3809618 bp

Protein-coding Genes

3148 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative reverse transcriptaseNQ492_13080Q47688Negative3133435 - 313444539817.7
hypothetical proteinNQ492_13085Not AvailableNegative3134691 - 313502913250.8
Hypothetical proteinNQ492_13090Not AvailableNegative3135133 - 313645247744.6
hypothetical proteinNQ492_13095Not AvailableNegative3136466 - 31367359748.59
Hypothetical proteinNQ492_13100Not AvailableNegative3136813 - 3139731107540.0
Putative phage tail proteinNQ492_13105Not AvailableNegative3139716 - 314092445050.3
Hypothetical proteinNQ492_13110Not AvailableNegative3140926 - 314144419244.9
Putative tape measure domain proteinNQ492_13115Not AvailableNegative3141449 - 3145387144325.0
hypothetical proteinNQ492_13120Not AvailableNegative3145614 - 314619521828.4
Hypothetical proteinNQ492_13125Not AvailableNegative3146270 - 314680618927.7

Displaying genes 1 – 10 of 5848 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
Metabolite IDMetabolite nameStructureCAS number
BASm00059743-hydroxyhexadecanoateC16H31O3Not availableNot available
Average271.422Da
Monoisotopic271.227868438Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014057Isovaleric acidC5H10O2Chemical structure of Isovaleric acid503-74-2
Average102.1317Da
Monoisotopic102.068079564Da
BASm0014061Pimelic acidC7H12O4Chemical structure of Pimelic acid111-16-0
Average160.1678Da
Monoisotopic160.073558872Da
BASm0014158N-AcetylhistamineC7H11N3OChemical structure of N-AcetylhistamineNULL
Average153.1817Da
Monoisotopic153.090211989Da
BASm0014333Hydroxypropanedioic acidC3H4O5Chemical structure of Hydroxypropanedioic acidNULL
Average120.0609Da
Monoisotopic120.005873238Da
BASm0039642Trichomonas vaginalisNot available110-60-1Not available

Displaying 1–10 of 12 metabolites

Health Effects

No health effects information available for this bacterium.