Rhizorhabdus wittichii RW1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii RW1

NC_009511.1NC_009508.1NC_009507.1

Gene Summary

Adenine Count

43401 bp

Thymine Count

42984 bp

Guanine Count

67570 bp

Cytosine Count

68802 bp

Genome Length

222757 bp

Protein-coding Genes

223 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSWIT_RS00005Not Available+245 - 167852706.6
iron-sulfur cluster assembly scaffold proteinSWIT_RS00010Not Available+1870 - 230715143.1
cation:proton antiporterSWIT_RS00015Not Available+2304 - 409162996.8
duf423 domain-containing proteinSWIT_RS00020Not Available+4078 - 443111800.8
flotillin family proteinSWIT_RS00025Not Available-4444 - 615361670.5
yqij family proteinSWIT_RS00030Not Available-6150 - 676721510.4
3-dehydroquinate synthaseSWIT_RS00035Not Available-6840 - 794938731.4
shikimate kinaseSWIT_RS00040Not Available-7946 - 848819808.1
hypothetical proteinSWIT_RS28830Not Available+8622 - 87594892.17
hypothetical proteinSWIT_RS00045Not Available+8740 - 1055463051.6

Displaying genes 1 – 10 of 5561 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1683 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1683 metabolites